Basic Information
Locus ID:
nbis-gene-42484
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00077.1 | 953256 | 954593 | - | nbis-gene-42484 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 36,611.90 Da | 63.25 | 65.16 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 225 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | NP_001388310.1 | uncharacterized LOC124188254 [Zea mays] | 0 |
| TrEMBL | Q53RL8 | Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g36600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | AH03.1681, BH02.1694, BH03.321, BH04.871, BH07.2625 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_3AG0221350, gene-QOZ80_3BG0267940 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G007240, Oco10G013850, Oco11G010490, Oco19G003500 |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_06G044000, gene-BS78_08G060500, gene-BS78_K024200 ... |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G030640, Chr01G034250, Chr03G009660, Chr05G004500 ... |
| Poaceae | Zea mays | 1 | Zm00001eb384270_P001 |
| Poaceae | Zoysia japonica | 11 | nbis-gene-1295, nbis-gene-27399, nbis-gene-33913 ... |