Basic Information
Locus ID:
nbis-gene-42305
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00076.1 | 389421 | 397715 | + | nbis-gene-42305 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 72,838.36 Da | 48.12 | 50.70 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02809 | Ubiquitin interaction motif | 562 | 576 | 0.0094 | IPR003903 |
| Pfam | PF02809 | Ubiquitin interaction motif | 68 | 83 | 0.79 | IPR003903 |
| SMART | SM00726 | uim | 68 | 87 | 57.0 | IPR003903 |
| SMART | SM00726 | uim | 561 | 580 | 0.13 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 561 | 580 | 9.945861 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 68 | 87 | 10.154456 | IPR003903 |
| ProSiteProfiles | PS50808 | Zinc finger BED-type profile. | 3 | 57 | 9.484295 | IPR003656 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 672 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 298 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039806370.1 | uncharacterized protein LOC120670356 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9VEY6 | BED-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_15822 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G006240, Chr04G025720, Chr07G004450 |
| Poaceae | Zea mays | 1 | Zm00001eb307380_P001 |
| Poaceae | Zoysia japonica | 21 | nbis-gene-1111, nbis-gene-13247, nbis-gene-14314 ... |