Basic Information
Locus ID:
nbis-gene-41956
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00073.1 | 992956 | 998795 | + | nbis-gene-41956 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 87,277.02 Da | 33.73 | 104.81 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 539 | 759 | 7.68465E-126 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 12 | 235 | 1.52006E-66 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 265 | 437 | 4.10564E-83 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 91 | 214 | 3.5E-7 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 293 | 422 | 1.5E-17 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 558 | 706 | 4.1E-30 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 532 | 766 | 2.84E-69 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 293 | 440 | 5.43E-34 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 11 | 239 | 6.15E-19 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 266 | 447 | 4.0E-46 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 7 | 250 | 2.9E-30 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 524 | 774 | 1.2E-82 | IPR027417 |
| SMART | SM00382 | AAA_5 | 298 | 469 | 8.5E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 567 | 752 | 4.0E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 541 | 775 | 18.360807 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 90 | 227 | 17.760977 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 259 | 518 | 15.266251 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 395 | 409 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034596572.1 | putative ABC transporter C family member 15 [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811PFS1 | ABC transporter C family member 15 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS25643 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology