Basic Information
Locus ID:
nbis-gene-41684
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00071.1 | 1493792 | 1498470 | - | nbis-gene-41684 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 60,780.21 Da | 48.70 | 86.51 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10557 | Cullin protein neddylation domain | 441 | 481 | 4.9E-13 | IPR019559 |
| Pfam | PF00888 | Cullin family | 356 | 409 | 3.4E-13 | IPR001373 |
| Pfam | PF00888 | Cullin family | 30 | 118 | 3.3E-22 | IPR001373 |
| Pfam | PF00888 | Cullin family | 121 | 356 | 2.8E-75 | IPR001373 |
| SUPERFAMILY | SSF75632 | Cullin homology domain | 283 | 422 | 9.59E-31 | IPR036317 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 422 | 481 | 2.27E-14 | IPR036390 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 23 | 282 | 2.2E-69 | IPR016159 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 283 | 397 | 4.1E-25 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 16 | 120 | 7.2E-31 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 174 | 282 | 1.8E-33 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 407 | 485 | 5.3E-20 | IPR036388 |
| SMART | SM00182 | cul_2 | 314 | 425 | 7.2E-5 | IPR016158 |
| SMART | SM00884 | Cullin_Nedd8_2 | 438 | 490 | 5.7E-11 | IPR019559 |
| ProSiteProfiles | PS50069 | Cullin family profile. | 284 | 383 | 21.266705 | IPR016158 |
| Coils | Coil | Coil | 74 | 94 | - | - |
| Coils | Coil | Coil | 135 | 155 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26830.1 | cullin 3. Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal. | 0 |
| RefSeq | XP_004974397.2 | cullin-3A [Setaria italica] | 0 |
| Q9ZVH4 | Cullin-3A OS=Arabidopsis thaliana OX=3702 GN=CUL3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W3P8 | CULLIN_2 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_09418 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB03g031460.2N |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G010640 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38991, nbis-gene-41684 |