Basic Information
Locus ID:
nbis-gene-41674
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00071.1 | 1401666 | 1404164 | - | nbis-gene-41674 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.03 | 32,506.63 Da | 45.65 | 89.86 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 81 | 161 | 2.39568E-52 | - |
| Pfam | PF07650 | KH domain | 86 | 159 | 1.2E-11 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 172 | 254 | 1.0E-24 | IPR001351 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 159 | 257 | 6.93E-28 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 76 | 165 | 1.57E-25 | IPR009019 |
| Gene3D | G3DSA:3.30.1140.32 | - | 159 | 285 | 5.6E-66 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 64 | 157 | 3.6E-48 | IPR015946 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 74 | 276 | 4.2E-71 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 87 | 158 | 11.016348 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 213 | 249 | - | IPR018280 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 41 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_044430139.1 | 40S ribosomal protein S3-3 [Triticum aestivum] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W3L1 | KH type-2 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_09375 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology