Basic Information
Locus ID:
nbis-gene-41486
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00071.1 | 600124 | 606072 | + | nbis-gene-41486 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.09 | 29,766.36 Da | 52.49 | 76.93 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 120 | 155 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 156 | 190 | 0.0062 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 196 | 233 | 1.8E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 118 | 255 | 4.88E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 168 | 258 | 1.2E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 111 | 167 | 1.5E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 116 | 155 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 234 | 2.0E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 157 | 191 | 86.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 201 | 236 | 11.5765 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 123 | 155 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 201 | 243 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 123 | 164 | 12.379869 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 274 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_004972947.1 | WD repeat-containing protein 26 isoform X2 [Setaria italica] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W5R1 | WD repeat-containing protein 26-like OS=Eragrostis curvula OX=38414 GN=EJB05_09984 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology