Basic Information
Locus ID:
nbis-gene-4130
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00003.1 | 4118535 | 4121805 | - | nbis-gene-4130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 45,244.95 Da | 32.97 | 78.28 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 193 | 242 | 8.1E-12 | IPR027356 |
| Pfam | PF03000 | NPH3 family | 242 | 269 | 1.9E-6 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 28 | 99 | 9.42E-9 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 21 | 102 | 1.9E-5 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 234 | 293 | 18.330559 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 414 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37590.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_039829525.1 | BTB/POZ domain-containing protein NPY4-like [Panicum virgatum] | 0 |
| Q0WL52 | Phototropic-responsive NPH3 family protein NPY5 OS=Arabidopsis thaliana OX=3702 GN=NPY5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9WIX5 | NPH3 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_07632 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology