Basic Information
Locus ID:
nbis-gene-40562
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00068.1 | 455472 | 459552 | + | nbis-gene-40562 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 43,745.06 Da | 62.17 | 83.17 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 160 | 208 | 2.76122E-16 | - |
| Pfam | PF12906 | RING-variant domain | 160 | 207 | 9.1E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 211 | 1.06E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 215 | 2.3E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 159 | 208 | 3.9E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 152 | 214 | 19.725155 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 330 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039804071.1 | uncharacterized protein LOC120668433 isoform X2 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9TB02 | 3-hydroxyisobutyrate dehydrogenase OS=Eragrostis curvula OX=38414 GN=EJB05_41954 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology