Basic Information
Locus ID:
nbis-gene-40410
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Pyridoxal-phosphate dependent enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00067.1 | 1472325 | 1475928 | + | nbis-gene-40410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 37,926.96 Da | 54.38 | 94.28 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01561 | CBS_like | 41 | 302 | 5.7828E-110 | - |
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | 130 | 293 | 6.6E-33 | IPR001926 |
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | 37 | 116 | 1.5E-12 | IPR001926 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 33 | 308 | 1.2E-77 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 35 | 121 | 2.8E-16 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 122 | 311 | 7.6E-73 | IPR036052 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
KEGG Pathway
Pathway:
ko00270 (Cysteine and methionine metabolism)
map00270 (Cysteine and methionine metabolism)
ko00920 (Sulfur metabolism)
map00920 (Sulfur metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G28020.1 | cysteine synthase D2. Encodes cysteine synthase CysD2. | 0 |
| RefSeq | XP_025810926.1 | cysteine synthase-like [Panicum hallii] | 0 |
| Q00834 | Cysteine synthase OS=Spinacia oleracea OX=3562 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TMM2 | PALP domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_46243 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology