Basic Information
Locus ID:
nbis-gene-40335
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
ribosomal protein S20
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00067.1 | 1173795 | 1174380 | - | nbis-gene-40335 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 7,147.17 Da | 54.79 | 91.09 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 1 | 59 | 8.1E-16 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 1 | 61 | 4.45E-18 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 1 | 63 | 1.4E-25 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 1 | 60 | 9.5E-7 | IPR027486 |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_004964447.1 | 40S ribosomal protein S20 [Setaria italica] | 0 |
| P35686 | Small ribosomal subunit protein uS10 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811S5V7 | Ribosomal_S10 domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS61945 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology