Basic Information
Locus ID:
nbis-gene-40279
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
SET domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00067.1 | 953606 | 956188 | - | nbis-gene-40279 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 62,377.82 Da | 59.12 | 77.99 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 117 | 375 | 5.92511E-130 | - |
| Pfam | PF00069 | Protein kinase domain | 119 | 376 | 3.7E-66 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 116 | 438 | 1.03E-84 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 120 | 204 | 1.6E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 205 | 399 | 9.6E-61 | - |
| SMART | SM00220 | serkin_6 | 118 | 376 | 1.6E-93 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 118 | 376 | 47.989891 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 124 | 151 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 238 | 250 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 536 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12580.1 | phosphoenolpyruvate carboxylase-related kinase 1. | 0 |
| RefSeq | XP_015643554.1 | calcium-dependent protein kinase 17-like [Oryza sativa Japonica Group] | 0 |
| Q7XIM0 | Calcium-dependent protein kinase 17 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9SG71 | Protein kinase domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_56621 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14042, jg37166 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16094 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018978 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15489, Sbi_jg56301 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26767 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006602 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02066, Sgl07219 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000013, gene:ENSEOMG00000028669 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0002210, CQ.Regalona.r1.3BG0002330 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30143560, pistato.v30182140 |
| Apiaceae | Apium graveolens | 1 | Ag11G03909 |
| Arecaceae | Cocos nucifera | 2 | COCNU_09G001230, scaffold018491G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721378, gene-LOC103723343 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.425.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G26653, Ftri6G23869 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G12580.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007365m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g11180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g007500.2N, BniB03g005210.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2143 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g01100 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0190s00004.v1.0, Dusal.0529s00009.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g07770 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11825 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2211, evm.TU.LG10.1332 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040897 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21010 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.469, BH06.147, CH06.142 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0506870, gene-QOZ80_6BG0458570 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0642750.1 |
| Poaceae | Oryza coarctata | 2 | Oco11G001210, Oco12G001120 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g03682.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G019400 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G024070, Chr14G000960, Chr21G000050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G124700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG063810, gene_TRIDC7AG006080 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G432300.1, TraesCS7D02G052900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb269440_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40279, nbis-gene-51178 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29021, Zma_g31262 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1583 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g10460 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1330 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-12634, nbisL1-mrna-18139, nbisL1-mrna-29177 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-1873, nbisL1-mrna-3011, nbisL1-mrna-3905 ... |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12903, nbisL1-mrna-2118, nbisL1-mrna-8470 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000007l.225, evm.TU.utg000008l.103 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000674, Maker00009093, Maker00018439 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-1045, nbisL1-mrna-16079, nbisL1-mrna-23234 ... |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10841, nbisL1-mrna-20633, nbisL1-mrna-6235 |
| Salicaceae | Populus euphratica | 3 | populus_peu29222, populus_peu30582, populus_peu34331 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631820 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015027 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4126 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0312 |