Basic Information
Locus ID:
nbis-gene-39846
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Diphthamide synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00066.1 | 592809 | 596779 | + | nbis-gene-39846 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 34,014.63 Da | 30.12 | 78.79 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 10 | 136 | 2.5E-17 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 4 | 192 | 1.31E-44 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 86 | 195 | 4.5E-20 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 85 | 3.0E-38 | - |
| SMART | SM00220 | serkin_6 | 9 | 292 | 1.3E-7 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 9 | 298 | 17.474585 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 15 | 38 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 124 | 136 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 248 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04440.1 | casein kinase like 13. | 0 |
| RefSeq | XP_025797560.1 | casein kinase I isoform X2 [Panicum hallii] | 0 |
| Q5XF24 | Casein kinase 1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=CKL13 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1E5WM12 | Casein kinase 1-like protein 6 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0000574 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah006375 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000010269 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0011600 |
| Apiaceae | Apium graveolens | 6 | Ag10G00887, Ag4G00179, Ag5G00920, Ag5G01818, Ag6G02731 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.84.V1.1, AsparagusV1_Unassigned.1111.V1.1 |
| Brassicaceae | Brassica nigra | 1 | BniB03g068750.2N |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02064 |
| Poaceae | Echinochloa crus-galli | 1 | CH01.3984 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005496, gene-QYE76_008607 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G025590 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G305200, Tel6E01G260700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG018550 |
| Poaceae | Zea mays | 7 | Zm00001eb046190_P001, Zm00001eb096600_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29461, nbis-gene-39846 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8091 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4613 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1978 |
| Salicaceae | Populus euphratica | 1 | populus_peu22068 |