Basic Information
Locus ID:
nbis-gene-39720
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00065.1 | 1715763 | 1718318 | - | nbis-gene-39720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.17 | 38,829.69 Da | 65.65 | 75.44 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 150 | 191 | 1.6E-7 | IPR001841 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 256 | 297 | 2.0E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 250 | 303 | 7.39E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 190 | 4.95E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 233 | 308 | 9.6E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 192 | 2.5E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 257 | 297 | 4.1E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 152 | 192 | 1.9E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 257 | 297 | 10.541882 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 152 | 190 | 10.379599 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 221 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052137145.1 | RING-H2 finger protein ATL34-like [Oryza glaberrima] | 0 |
| TrEMBL | A0A0E0BF63 | RING-type domain-containing protein OS=Oryza glumipatula OX=40148 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Zoysia japonica | 1 | nbis-gene-39720 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24708 |