Basic Information
Locus ID:
nbis-gene-39696
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Exocyst complex component SEC3 N-terminal PIP2 binding PH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00065.1 | 1481793 | 1504436 | + | nbis-gene-39696 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 127,174.96 Da | 44.33 | 93.34 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF15277 | Exocyst complex component SEC3 N-terminal PIP2 binding PH | 50 | 146 | 2.2E-16 | IPR028258 |
| Pfam | PF09763 | Exocyst complex component Sec3 | 227 | 496 | 1.8E-49 | IPR019160 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 1016 | 1110 | 4.8E-8 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 893 | 977 | 2.5E-8 | IPR020683 |
| Pfam | PF09763 | Exocyst complex component Sec3 | 584 | 871 | 1.0E-40 | IPR019160 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 876 | 1123 | 2.35E-30 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 982 | 1131 | 1.3E-20 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 887 | 981 | 7.3E-15 | IPR036770 |
| SMART | SM00248 | ANK_2a | 886 | 916 | 3200.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 921 | 950 | 180.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1046 | 1075 | 61.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 955 | 984 | 0.024 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1011 | 1040 | 2.8 | IPR002110 |
| SMART | SM01313 | Sec3_PIP2_bind_2 | 47 | 147 | 6.4E-19 | IPR028258 |
| SMART | SM00248 | ANK_2a | 1082 | 1112 | 0.21 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 955 | 977 | 10.311981 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 955 | 977 | 10.33894 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 1082 | 1115 | 8.629499 | IPR002110 |
| Coils | Coil | Coil | 285 | 322 | - | - |
| Coils | Coil | Coil | 200 | 220 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47550.1 | exocyst complex component sec3A. Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. | 0 |
| RefSeq | XP_025794782.1 | exocyst complex component SEC3A-like [Panicum hallii] | 0 |
| Q9SX85 | Exocyst complex component SEC3A OS=Arabidopsis thaliana OX=3702 GN=SEC3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WDK0 | Sec3-PIP2_bind domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_05599 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10628, jg11927, jg6282 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15316 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002782 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109570 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41668, Sbi_jg48472 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27779 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00025870, GOSA_00025871 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl53431, Sgl58696, Sgl79523, Sgl81991 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004096, gene:ENSEOMG00000021685 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0012250, CQ.Regalona.r1.5BG0013110 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30045990 |
| Apiaceae | Apium graveolens | 2 | Ag11G03106, Ag2G00302 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G018100, COCNU_14G010030, scaffold016103G000030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707544, gene-LOC103721174 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.823.V1.1, AsparagusV1_07.764.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G20482, Ftri1G11120 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G47550.2, AT1G47560.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011225m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g34560.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g063440.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1662 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1785 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g15140, gene.Cymno11g03510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g05290 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.521 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002405, Pov_00015930 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb5G27810, Lb7G33875, Lb7G33876 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1184, AH04.1101, CH01.1464, CH04.1196, CH04.2193 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0225730, gene-QOZ80_3BG0270770 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0341340.1, HORVU.MOREX.r3.4HG0343360.1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_062991, gene-QYE76_062994, gene-QYE76_063588 ... |
| Poaceae | Oryza coarctata | 4 | Oco05G018390, Oco06G019180, Oco21G004310, Oco22G005110 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g42750.1, LOC_Os11g17600.3 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G150700, gene-BS78_08G095500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103991, Pt_Chr0104417 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G009360, Chr04G024530, Chr07G018340, Chr07G023240 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G115900, Tel4E01G131700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG036860, gene_TRIDC4AG038340 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G233400.1, TraesCS4A02G243100.3 ... |
| Poaceae | Zea mays | 3 | Zm00001eb051220_P002, Zm00001eb168780_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20373, nbis-gene-39696, nbis-gene-43452 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g18686, Zma_g3253, Zma_g924 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2705, evm.TU.LG08.342, evm.TU.LG18.483 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g28270, gene.Posoc04g06650 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.530, evm.TU.Scaffold_8_RagTag.1051 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19099, nbisL1-mrna-8984 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-6028, nbisL1-mrna-9169 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15413, nbisL1-mrna-21868 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.533, evm.TU.utg000018l.349 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003441, Maker00011961 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5840 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12465, nbisL1-mrna-24088 |
| Salicaceae | Populus euphratica | 2 | populus_peu31932, populus_peu31933 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604116, gene-LOC132618188 |
| Solanaceae | Solanum chilense | 1 | SOLCI007325100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007175, gene-LOC107026072 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_1342, gene_15182, gene_4143 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2078, TC06G1642 |
| Zosteraceae | Zostera marina | 2 | Zosma06g01640.v3.1, Zosma06g06920.v3.1 |