Basic Information
Locus ID:
nbis-gene-39527
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00065.1 | 451602 | 459336 | + | nbis-gene-39527 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.81 | 30,449.98 Da | 67.47 | 69.49 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14634 | zinc-RING finger domain | 216 | 255 | 1.1E-6 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 211 | 258 | 1.11E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 209 | 271 | 2.2E-7 | IPR013083 |
| ProSiteProfiles | PS51382 | SPX domain profile. | 1 | 222 | 9.465927 | IPR004331 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 221 | 230 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38920.2 | SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related. | 0 |
| RefSeq | XP_008669014.1 | uncharacterized protein LOC100274874 isoform X1 [Zea mays] | 0 |
| A2XK56 | Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_12825 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9WD21 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_05372 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for nbis-gene-39527.