HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: nbis-gene-39492
Species & Taxonomic ID: Zoysia japonica & 309978
Genome Assembly: GCA_040438285.1
Description: Zinc knuckle
Maps and Mapping Data
Chromosome Start End Strand ID
Zjn_sc00065.1 244195 248187 + nbis-gene-39492
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.52 36,908.98 Da 35.54 71.86 -0.50
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
MobiDBLite mobidb-lite consensus disorder prediction 1 21 - -
MobiDBLite mobidb-lite consensus disorder prediction 209 229 - -
KEGG Pathway
KO Term:
K10624 (E3 ubiquitin-protein ligase RBBP6 [EC:2.3.2.27])
Best hit
Source Best Hit ID Description E-value
RefSeq XP_025791506.1 E3 ubiquitin ligase PQT3-like [Panicum hallii] 0
TrEMBL A0A5J9WBV3 E3 ubiquitin ligase PQT3-like OS=Eragrostis curvula OX=38414 GN=EJB05_05332 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 12 AH01.1356, AH01.924, AH02.4301, BH01.1054, BH01.1300 ...
BH02.4333, BH03.2991, BH03.2993, CH01.1101, CH01.1350, CH02.4377, CH03.3185
Poaceae Eleusine coracana subsp. coracana 6 gene-QOZ80_3AG0223040, gene-QOZ80_3AG0247010 ...
gene-QOZ80_3AG0247320, gene-QOZ80_3BG0267730, gene-QOZ80_3BG0280930, gene-QOZ80_3BG0281220
Poaceae Hordeum vulgare 5 HORVU.MOREX.r3.3HG0294780.1.CDS1 ...
HORVU.MOREX.r3.3HG0294790.1.CDS1, HORVU.MOREX.r3.3HG0294810.1.CDS1, HORVU.MOREX.r3.3HG0294820.1.CDS1, HORVU.MOREX.r3.4HG0333260.1
Poaceae Lolium multiflorum 3 gene-QYE76_024409, gene-QYE76_063238, gene-QYE76_065995
Poaceae Oryza coarctata 4 Oco05G012820, Oco06G013590, Oco06G013660, Oco06G020340
Poaceae Oryza sativa 2 LOC_Os03g21570.1, LOC_Os03g45730.1
Poaceae Paspalum vaginatum 2 gene-BS78_01G137200, gene-BS78_01G363000
Poaceae Puccinellia tenuiflora 4 Pt_Chr0104603, Pt_Chr0104637, Pt_Chr0300664, Pt_Chr0300666
Poaceae Sporobolus alterniflorus 8 Chr01G033900, Chr04G025380, Chr07G024130, Chr12G005490 ...
Chr12G005730, Chr12G028250, Chr19G007250, Chr27G009580
Poaceae Thinopyrum elongatum 1 Tel4E01G036800
Poaceae Triticum dicoccoides 2 gene_TRIDC4AG045680, gene_TRIDC4BG002770
Poaceae Triticum aestivum 4 TraesCS3D02G321100.1.cds1, TraesCS4A02G297700.1 ...
TraesCS4B02G016000.1, TraesCS4D02G014400.1
Poaceae Zea mays 2 Zm00001eb052630_P001, Zm00001eb218140_P001
Poaceae Zoysia japonica 2 nbis-gene-20554, nbis-gene-39492
Poaceae Zoysia macrostachya 1 Zma_g3134
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.