Basic Information
Locus ID:
nbis-gene-39275
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00064.1 | 370746 | 371351 | - | nbis-gene-39275 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 21,602.71 Da | 35.42 | 84.23 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 54 | 116 | 1.16872E-10 | IPR002048 |
| CDD | cd00051 | EFh | 130 | 192 | 1.73162E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 55 | 115 | 4.3E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 128 | 191 | 3.5E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 44 | 191 | 4.97E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 122 | 198 | 4.0E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 15 | 121 | 3.0E-22 | - |
| SMART | SM00054 | efh_1 | 90 | 118 | 0.1 | IPR002048 |
| SMART | SM00054 | efh_1 | 166 | 194 | 4.1E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 54 | 82 | 2.7E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 130 | 158 | 0.0014 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 126 | 161 | 13.620752 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 50 | 85 | 13.983393 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 162 | 197 | 13.118635 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 86 | 121 | 10.161722 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 63 | 75 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 139 | 151 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 175 | 187 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 99 | 111 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | NP_001152651.1 | Probable calcium-binding protein CML11 [Zea mays] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9STD2 | Calcium-binding protein CML11 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_52327 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology