Basic Information
Locus ID:
nbis-gene-39258
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00064.1 | 225381 | 226220 | + | nbis-gene-39258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 30,503.62 Da | 68.74 | 85.81 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 185 | 228 | 2.45644E-16 | - |
| Pfam | PF13639 | Ring finger domain | 185 | 228 | 3.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 173 | 234 | 2.09E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 234 | 1.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 186 | 227 | 1.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 186 | 228 | 12.725326 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42350.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025797526.1 | RING-H2 finger protein ATL28-like [Panicum hallii] | 0 |
| Q8H7N9 | E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7C9G5 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G386800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_10G002660 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120104356 |
| Poaceae | Echinochloa crus-galli | 1 | BH01.3141 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0117830, gene-QOZ80_2BG0171440 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0052980.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012836 |
| Poaceae | Oryza coarctata | 1 | Oco20G010740 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g42390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G276600 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G005930, Chr13G018950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G335000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG029180, gene_TRIDC1BG034640 |
| Poaceae | Triticum aestivum | 1 | TraesCS1A02G192600.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb024440_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39258, nbis-gene-8861 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12978 |