Basic Information
Locus ID:
nbis-gene-39178
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00063.1 | 1472962 | 1476326 | - | nbis-gene-39178 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 18,468.47 Da | 19.75 | 68.79 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 57 | 90 | 3.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 96 | 133 | 8.5E-9 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 36 | 146 | 1.04E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 21 | 172 | 2.4E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 94 | 134 | 2.0E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 52 | 91 | 3.7E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 59 | 100 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 101 | 136 | 11.5765 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 101 | 143 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 59 | 90 | 9.99469 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_039852710.1 | WD repeat-containing protein 26 homolog [Panicum virgatum] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W5R1 | WD repeat-containing protein 26-like OS=Eragrostis curvula OX=38414 GN=EJB05_09984 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology