Basic Information
Locus ID:
nbis-gene-39012
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00063.1 | 725306 | 727790 | + | nbis-gene-39012 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.55 | 25,488.53 Da | 35.41 | 96.97 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 15 | 95 | 7.26558E-52 | - |
| Pfam | PF07650 | KH domain | 20 | 93 | 7.1E-12 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 106 | 188 | 6.0E-25 | IPR001351 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 93 | 191 | 3.92E-28 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 10 | 99 | 9.16E-26 | IPR009019 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 92 | 6.3E-48 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 93 | 219 | 3.0E-66 | IPR036419 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 8 | 210 | 1.8E-71 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 21 | 92 | 11.016348 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 147 | 183 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_004972758.1 | 40S ribosomal protein S3-3 [Setaria italica] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A368RIK8 | KH type-2 domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G050300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology