Basic Information
Locus ID:
nbis-gene-38991
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00063.1 | 640761 | 644032 | + | nbis-gene-38991 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.79 | 34,914.97 Da | 56.55 | 86.31 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00888 | Cullin family | 40 | 136 | 2.1E-27 | IPR001373 |
| Pfam | PF00888 | Cullin family | 139 | 193 | 1.5E-12 | IPR001373 |
| Pfam | PF10557 | Cullin protein neddylation domain | 225 | 286 | 2.1E-24 | IPR019559 |
| SUPERFAMILY | SSF75632 | Cullin homology domain | 138 | 206 | 1.96E-11 | IPR036317 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 206 | 295 | 3.36E-28 | IPR036390 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 34 | 146 | 5.75E-32 | IPR016159 |
| Gene3D | G3DSA:1.10.10.10 | - | 191 | 295 | 2.9E-35 | IPR036388 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 26 | 151 | 1.5E-37 | - |
| SMART | SM00884 | Cullin_Nedd8_2 | 222 | 289 | 1.8E-34 | IPR019559 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26830.1 | cullin 3. Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal. | 0 |
| RefSeq | XP_025820594.1 | cullin-3A-like [Panicum hallii] | 0 |
| Q9ZVH4 | Cullin-3A OS=Arabidopsis thaliana OX=3702 GN=CUL3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A540M3C8 | Cullin_Nedd8 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_021148 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB03g031460.2N |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G010640 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38991, nbis-gene-41684 |