halophFGD

Basic Information

Locus ID: nbis-gene-38896

Species & Taxonomic ID: Zoysia japonica & 309978

Genome Assembly: GCA_040438285.1

Description: F-box LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Zjn_sc00063.1	105037	120748	-	nbis-gene-38896

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.30	16,278.05 Da	48.28	115.73	0.33

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	110	145	7.9E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	100	145	3.01E-8	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	109	149	3.0E-8	-
ProSiteProfiles	PS50181	F-box domain profile.	107	150	9.232525	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_004974567.1	putative F-box/LRR-repeat protein 22 [Setaria italica]	0
TrEMBL	A0A5J9SSN6	F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_52418 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	10	AH02.3531, AH08.564, BH02.3424, BH08.2212, BH08.597 ... BH08.607, CH02.2966, CH08.2399, CH08.709, CH08.711
Poaceae	Eleusine coracana subsp. coracana	15	gene-QOZ80_1AG0007090, gene-QOZ80_1BG0050140 ... gene-QOZ80_1BG0055810, gene-QOZ80_1BG0086270, gene-QOZ80_7BG0606530, gene-QOZ80_8AG0620370, gene-QOZ80_8AG0620390, gene-QOZ80_8BG0648100, gene-QOZ80_8BG0648110, gene-QOZ80_8BG0648130, gene-QOZ80_8BG0648140, gene-QOZ80_8BG0648150, gene-QOZ80_8BG0648250, gene-QOZ80_8BG0666090, gene-QOZ80_8BG0666100
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0319820.1.CDS1 ... HORVU.MOREX.r3.7HG0662550.1
Poaceae	Lolium multiflorum	11	gene-QYE76_009231, gene-QYE76_009232, gene-QYE76_009233 ... gene-QYE76_009331, gene-QYE76_017651, gene-QYE76_020633, gene-QYE76_027428, gene-QYE76_027429, gene-QYE76_027430, gene-QYE76_027431, gene-QYE76_027433
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0205788, Pt_Chr0205789, Pt_Chr0207610, Pt_Chr0207611 ... Pt_Chr0405068, Pt_Chr0500250
Poaceae	Sporobolus alterniflorus	2	Chr20G001670, Chr20G010470
Poaceae	Thinopyrum elongatum	5	Tel3E01G785300, Tel6E01G283500, Tel7E01G327200 ... Tel7E01G327300, Tel7E01G327400
Poaceae	Triticum dicoccoides	1	gene_TRIDC6AG018010
Poaceae	Triticum aestivum	5	TraesCS3B02G537900.1, TraesCS3B02G538000.1 ... TraesCS3D02G483500.1, TraesCS6A02G133600.1, TraesCS7D02G109800.1
Poaceae	Zea mays	1	Zm00001eb386420_P001
Poaceae	Zoysia japonica	4	nbis-gene-31300, nbis-gene-38896, nbis-gene-48553 ... nbis-gene-48554
Poaceae	Zoysia macrostachya	2	Zma_g11315, Zma_g15927