Basic Information
Locus ID:
nbis-gene-38847
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
NTMC2T4.1
Description:
ntmc2t4,ntmc2type4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00062.1 | 1190098 | 1199487 | + | nbis-gene-38847 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 54,357.43 Da | 24.65 | 101.08 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 257 | 357 | 5.5494E-29 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 240 | 3.8E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 255 | 351 | 1.6E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 253 | 385 | 2.49E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 250 | 409 | 7.3E-34 | IPR035892 |
| SMART | SM00239 | C2_3c | 256 | 354 | 3.6E-20 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 238 | 357 | 20.974819 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 241 | 24.48387 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 297 | 310 | 2.2E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 319 | 327 | 2.2E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 272 | 284 | 2.2E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_025804039.1 | synaptotagmin-5 [Panicum hallii] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7ENE6 | Synaptotagmin-5 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G100300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology