Basic Information
Locus ID:
nbis-gene-38695
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00061.1 | 1435354 | 1442090 | + | nbis-gene-38695 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 49,635.32 Da | 29.48 | 95.74 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14624 | VWA / Hh protein intein-like | 340 | 407 | 1.1E-13 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 64 | 203 | 2.38E-20 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 68 | 216 | 3.0E-21 | IPR036465 |
| SMART | SM00327 | VWA_4 | 66 | 215 | 3.5E-5 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 48 | 215 | 9.742161 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| Coils | Coil | Coil | 317 | 337 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08050.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_002439029.2 | uncharacterized protein LOC8064996 [Sorghum bicolor] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835AD21 | VWFA domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_058761 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology