Basic Information
Locus ID:
nbis-gene-3869
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
NTMC2T4.2
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00003.1 | 2931377 | 2950279 | + | nbis-gene-3869 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 115,346.43 Da | 51.47 | 68.41 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 794 | 886 | 8.88969E-30 | - |
| Pfam | PF05793 | Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | 524 | 666 | 2.6E-16 | IPR008851 |
| Pfam | PF00168 | C2 domain | 792 | 889 | 1.6E-21 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 790 | 915 | 3.9E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 788 | 924 | 2.9E-29 | IPR035892 |
| SMART | SM00239 | C2_3c | 793 | 891 | 1.1E-20 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 772 | 894 | 20.726261 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 576 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1002 | 1042 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1015 | 1029 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 638 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 577 | 601 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 144 | - | - |
| Coils | Coil | Coil | 935 | 955 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_002465551.1 | synaptotagmin-5 [Sorghum bicolor] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WID9 | Synaptotagmin-5 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_07313 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology