Basic Information
Locus ID:
nbis-gene-38648
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
CDPK9
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00061.1 | 1010992 | 1011354 | - | nbis-gene-38648 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 13,023.23 Da | 62.82 | 105.00 | 0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 3 | 47 | 1.78E-6 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 39 | 1.9E-6 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38910.1 | calcium-dependent protein kinase 20. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_039838964.1 | pentatricopeptide repeat-containing protein At4g01570-like [Panicum virgatum] | 0 |
| Q53P85 | Calcium-dependent protein kinase 24 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A059Q135 | Pentatricopeptide repeat-containing protein OS=Saccharum hybrid cultivar R570 OX=131158 GN=SHCRBa_018_K13_F_250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah039308 |
| Apiaceae | Apium graveolens | 2 | Ag1G00989, Ag2G00231 |
| Brassicaceae | Brassica nigra | 1 | BniB02g027910.2N |
| Poaceae | Zea mays | 3 | Zm00001eb016070_P001, Zm00001eb024950_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-1403, nbis-gene-38648 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16587 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-931 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13613, nbisL1-mrna-18710 |
| Salicaceae | Populus euphratica | 1 | populus_peu24041 |