Basic Information
Locus ID:
nbis-gene-38635
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00061.1 | 866002 | 867515 | - | nbis-gene-38635 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 49,058.12 Da | 45.18 | 82.16 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 41 | 379 | 1.7E-57 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 280 | 350 | 1.13E-14 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 39 | 383 | 1.87E-52 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 55 | 380 | 2.5E-84 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 279 | 350 | 2.5E-84 | IPR029070 |
| SMART | SM00636 | 2g34 | 38 | 379 | 3.3E-68 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 38 | 396 | 54.902328 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_002450704.1 | chitinase-3-like protein 1 [Sorghum bicolor] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9UQG2 | GH18 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_28010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology