Basic Information
Locus ID:
nbis-gene-38603
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00061.1 | 611684 | 641092 | - | nbis-gene-38603 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 12,715.39 Da | 53.48 | 80.81 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 72 | 102 | 3.8E-7 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 73 | 105 | 2.55E-10 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 38 | 110 | 5.0E-11 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 105 | 11.807187 | IPR028889 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10590.1 | ubiquitin-specific protease 10. encodes a member of the ubiquitin-specific protease family, UBP10 | 0 |
| RefSeq | XP_020575010.1 | ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Phalaenopsis equestris] | 0 |
| Q93Y01 | Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=UBP9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UP27 | Ubiquitin carboxyl-terminal hydrolase OS=Eragrostis curvula OX=38414 GN=EJB05_27992 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_02G000740, COCNU_02G000750 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-36063, nbis-gene-36064, nbis-gene-38598 ... |