Basic Information
Locus ID:
nbis-gene-38567
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00061.1 | 267287 | 269742 | + | nbis-gene-38567 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 70,002.70 Da | 45.68 | 84.28 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04535 | Domain of unknown function (DUF588) | 482 | 568 | 3.0E-12 | IPR006702 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 388 | 452 | 3.6E-7 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 59 | 217 | 1.3E-20 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 56 | 227 | 1.22E-27 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 59 | 231 | 3.9E-35 | IPR036465 |
| SMART | SM00327 | VWA_4 | 57 | 231 | 1.2E-23 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 59 | 229 | 16.610254 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 483 | - | - |
| Coils | Coil | Coil | 361 | 403 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_039777425.1 | uncharacterized protein LOC120644782 [Panicum virgatum] | 0 |
| C5XEK4 | CASP-like protein 4U1 OS=Sorghum bicolor OX=4558 GN=Sb03g029220 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UNN9 | VWFA domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_27867 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology