halophFGD

Basic Information

Locus ID: nbis-gene-38324

Species & Taxonomic ID: Zoysia japonica & 309978

Genome Assembly: GCA_040438285.1

Description: Belongs to the ATG8 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Zjn_sc00060.1	331316	343051	+	nbis-gene-38324

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.43	25,963.50 Da	53.94	72.96	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16128	Ubl_ATG8	123	225	6.73394E-73	-
Pfam	PF02991	Autophagy protein Atg8 ubiquitin like	125	228	5.7E-51	IPR004241
SUPERFAMILY	SSF54236	Ubiquitin-like	114	228	2.84E-43	IPR029071
Gene3D	G3DSA:3.10.20.90	-	104	228	9.9E-59	-

KEGG Pathway

KO Term:

K08341 (GABA(A) receptor-associated protein)

Pathway:

ko04068 (FoxO signaling pathway) map04068 (FoxO signaling pathway) ko04136 (Autophagy - other) map04136 (Autophagy - other) ko04137 (Mitophagy - animal) map04137 (Mitophagy - animal) ko04138 (Autophagy - yeast) map04138 (Autophagy - yeast) ko04139 (Mitophagy - yeast) map04139 (Mitophagy - yeast) ko04140 (Autophagy - animal) map04140 (Autophagy - animal) ko04212 (Longevity regulating pathway - worm) map04212 (Longevity regulating pathway - worm) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway) map04621 (NOD-like receptor signaling pathway)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G21980.1	Ubiquitin-like superfamily protein. Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation.	0
RefSeq	NP_001137492.1	Autophagy-related protein 8A [Zea mays]	0
Swiss-Prot	Q2XPP5	Autophagy-related protein 8A OS=Oryza sativa subsp. indica OX=39946 GN=ATG8A PE=1 SV=1	0
TrEMBL	A0A5J9VU46	Autophagy-related protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_12321 PE=3 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for nbis-gene-38324.