Basic Information
Locus ID:
nbis-gene-38322
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Senescence regulator
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00060.1 | 328081 | 328536 | + | nbis-gene-38322 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 16,099.65 Da | 64.22 | 52.45 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04520 | Senescence regulator | 13 | 150 | 1.8E-20 | IPR007608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 151 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04630.1 | Protein of unknown function, DUF584. | 0 |
| RefSeq | XP_051212432.1 | uncharacterized protein LOC127330150 [Lolium perenne] | 0 |
| TrEMBL | A0A5J9VU46 | Autophagy-related protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_12321 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH03.3147, CH03.3504 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g32810.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G291600 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G005710, Chr27G011590 |
| Poaceae | Zea mays | 1 | Zm00001eb322590_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38322, nbis-gene-900 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5222, Zma_g6514 |