Basic Information
Locus ID:
nbis-gene-38250
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00059.1 | 1705748 | 1707247 | + | nbis-gene-38250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.95 | 49,554.75 Da | 48.09 | 93.52 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 348 | 390 | 1.6E-5 | IPR006566 |
| SUPERFAMILY | SSF81383 | F-box domain | 42 | 83 | 7.59E-7 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 148 | 369 | 7.14E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 44 | 244 | 6.7E-12 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58920.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_025822370.1 | putative F-box/LRR-repeat protein At5g41840 [Panicum hallii] | 0 |
| Q9LXR0 | Putative F-box/LRR-repeat protein At3g58920 OS=Arabidopsis thaliana OX=3702 GN=At3g58920 PE=4 SV=1 | 0 | |
| TrEMBL | A0A3L6PN83 | FBD domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM14G10040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH08.1101, CH08.1212 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7BG0591040, gene-QOZ80_7BG0591060 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G016940, Chr24G000100 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38250, nbis-gene-54026 |