Basic Information
Locus ID:
nbis-gene-37977
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00058.1 | 1841860 | 1847739 | - | nbis-gene-37977 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.80 | 121,452.00 Da | 55.28 | 72.61 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 822 | 876 | 1.7E-7 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 378 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 83 | - | - |
| Coils | Coil | Coil | 737 | 764 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19700.1 | SBP (S-ribonuclease binding protein) family protein. | 0 |
| RefSeq | XP_034602029.1 | probable BOI-related E3 ubiquitin-protein ligase 2 [Setaria viridis] | 0 |
| O81851 | E3 ubiquitin-protein ligase BOI OS=Arabidopsis thaliana OX=3702 GN=BOI PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6TRX2 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_7G091400v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg22987, jg26135, jg28876, jg30368, jg6367, jg886 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_26689, gene_8439 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009659, Ah036192 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g214010 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12235, Sbi_jg40014, Sbi_jg47203, Sbi_jg55340 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14323, Seu_jg21476 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00014077, GOSA_00020446, GOSA_00025957 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl12169, Sgl17541, Sgl55463, Sgl56107, Sgl61440 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016020, gene:ENSEOMG00000036878 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0021410, CQ.Regalona.r1.1BG0003060 ... |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30049130, pistato.v30110070, pistato.v30111600 ... |
| Apiaceae | Apium graveolens | 3 | Ag11G03559, Ag3G02538, Ag7G01810 |
| Arecaceae | Cocos nucifera | 6 | COCNU_02G016270, COCNU_07G002680, COCNU_10G001850 ... |
| Arecaceae | Phoenix dactylifera | 9 | gene-LOC103703229, gene-LOC103712352, gene-LOC103712804 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.1551.V1.1, AsparagusV1_04.1069.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri5G08994, Ftri8G18247, Ftri9G03065 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G35070.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027575m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g32840.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g087350.2N, BniB03g021030.2N, BniB05g003290.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1712 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1857 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno07g10770, gene.Cymno08g01030, gene.Cymno14g06220 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate04g02880, gene.Thate05g02190, gene.Thate08g19030 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.178, evm.TU.LG08.319 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00001664, Pov_00007350, Pov_00020646 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08457, Lb3G17635 |
| Poaceae | Echinochloa crus-galli | 31 | AH01.5312, AH01.5316, AH01.5320, AH01.5321, AH04.1522 ... |
| Poaceae | Eleusine coracana subsp. coracana | 13 | gene-QOZ80_2AG0132460, gene-QOZ80_2AG0132470 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0164840.1, HORVU.MOREX.r3.2HG0164850.1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_043742, gene-QYE76_043752, gene-QYE76_043757 ... |
| Poaceae | Oryza coarctata | 12 | Oco03G011310, Oco04G011700, Oco07G004860, Oco07G004870 ... |
| Poaceae | Oryza sativa | 7 | LOC_Os02g32420.1, LOC_Os04g32980.1, LOC_Os04g33030.1 ... |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_02G102800, gene-BS78_02G116100, gene-BS78_K157600 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703432, Pt_Chr0703434 |
| Poaceae | Sporobolus alterniflorus | 24 | Chr06G010840, Chr06G010850, Chr07G016550, Chr09G015510 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G516700, Tel2E01G516800 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG042020, gene_TRIDC2AG042030 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G290000.1, TraesCS2A02G290100.1 ... |
| Poaceae | Zea mays | 13 | Zm00001eb084550_P001, Zm00001eb084560_P001 ... |
| Poaceae | Zoysia japonica | 13 | nbis-gene-18926, nbis-gene-18928, nbis-gene-18931 ... |
| Poaceae | Zoysia macrostachya | 12 | Zma_g13594, Zma_g13595, Zma_g16391, Zma_g16392, Zma_g16393 ... |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1820, evm.TU.LG08.1121, evm.TU.LG09.119 ... |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g07990, gene.Posoc05g00230, gene.Posoc05g07190 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2322, evm.TU.Scaffold_2_RagTag.88 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-5121, nbisL1-mrna-6060 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10996, nbisL1-mrna-17149 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3241 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.1187, evm.TU.utg000016l.60 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006258, Maker00017359 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14123, nbisL1-mrna-4617 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21160, nbisL1-mrna-22462 |
| Salicaceae | Populus euphratica | 4 | populus_peu08697, populus_peu15383, populus_peu33031 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599333, gene-LOC132605265 |
| Solanaceae | Solanum chilense | 2 | SOLCI006584000, SOLCI007490200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107001770, gene-LOC107027228 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.31311_chr11_+, gene_7964 |
| Tamaricaceae | Tamarix chinensis | 4 | TC10G0138, TC10G0139, TC12G0766, TC12G0767 |
| Zosteraceae | Zostera marina | 2 | Zosma05g08660.v3.1, Zosma05g08670.v3.1 |