Basic Information
Locus ID:
nbis-gene-37768
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00058.1 | 889420 | 891414 | - | nbis-gene-37768 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.88 | 44,897.82 Da | 63.80 | 71.79 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 233 | 276 | 2.39163E-21 | - |
| Pfam | PF13639 | Ring finger domain | 233 | 276 | 4.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 228 | 281 | 3.53E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 209 | 284 | 7.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 234 | 275 | 3.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 234 | 276 | 11.869652 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 119 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_025823082.1 | E3 ubiquitin-protein ligase EL5-like [Panicum hallii] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TSG4 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_37728 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology