Basic Information
Locus ID:
nbis-gene-36802
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00055.1 | 1582098 | 1601423 | + | nbis-gene-36802 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 27,087.23 Da | 41.98 | 75.67 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 42 | 136 | 5.46229E-29 | IPR002083 |
| Pfam | PF00917 | MATH domain | 47 | 93 | 2.7E-5 | IPR002083 |
| Pfam | PF00917 | MATH domain | 95 | 137 | 1.9E-4 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 168 | 230 | 1.1E-6 | IPR001394 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 38 | 141 | 3.27E-31 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 142 | 230 | 2.16E-14 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 143 | 232 | 3.5E-13 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 93 | 142 | 1.4E-15 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 24 | 92 | 1.3E-16 | IPR008974 |
| SMART | SM00061 | math_3 | 42 | 117 | 3.7E-6 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 40 | 136 | 23.433712 | IPR002083 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.3 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_025805816.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Panicum hallii] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1D6IUM7 | Ubiquitin carboxyl-terminal hydrolase 13 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d023640 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020776, gene:ENSEOMG00000042009 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30053150, pistato.v30053760 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1844.V1.1, AsparagusV1_05.3047.V1.1 ... |
| Brassicaceae | Arabidopsis thaliana | 38 | AT1G31370.1, AT1G31380.1, AT1G31390.1, AT1G31400.1 ... |
| Brassicaceae | Eutrema salsugineum | 38 | Thhalv10005920m.g.v1.0, Thhalv10006412m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 18 | Sp1g34680.v2.2, Sp2g04170.v2.2, Sp2g04180.v2.2 ... |
| Brassicaceae | Brassica nigra | 59 | BniB01g003420.2N, BniB01g003430.2N, BniB01g003440.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1118 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021253 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36802 |
| Salicaceae | Populus euphratica | 1 | populus_peu12364 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019779 |
| Zosteraceae | Zostera marina | 6 | Zosma01g13790.v3.1, Zosma02g07570.v3.1, Zosma03g09470.v3.1 ... |