Basic Information
Locus ID:
nbis-gene-36397
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
DNA binding domain with preference for A/T rich regions
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00053.1 | 1602486 | 1610694 | + | nbis-gene-36397 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 34,655.96 Da | 52.13 | 78.98 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF46565 | Chaperone J-domain | 140 | 217 | 7.33E-8 | IPR036869 |
| Gene3D | G3DSA:1.10.287.110 | DnaJ domain | 136 | 241 | 2.9E-7 | IPR036869 |
| SMART | SM00271 | dnaj_3 | 148 | 212 | 0.0099 | IPR001623 |
| ProSiteProfiles | PS50076 | dnaJ domain profile. | 149 | 220 | 10.042146 | IPR001623 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 268 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02170.1 | metacaspase 1. Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain | 0 |
| RefSeq | XP_039854423.1 | proline-rich protein 36-like [Panicum virgatum] | 0 |
| Q7XJE6 | Metacaspase-1 OS=Arabidopsis thaliana OX=3702 GN=AMC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9T2M7 | J domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_48696 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology