Basic Information
Locus ID:
nbis-gene-36195
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00053.1 | 497269 | 505826 | - | nbis-gene-36195 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.57 | 92,789.14 Da | 50.02 | 81.92 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 714 | 757 | 4.09535E-17 | - |
| Pfam | PF01535 | PPR repeat | 146 | 173 | 0.0022 | IPR002885 |
| Pfam | PF13639 | Ring finger domain | 714 | 757 | 5.4E-14 | IPR001841 |
| Pfam | PF01535 | PPR repeat | 176 | 206 | 3.6E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 77 | 99 | 0.12 | IPR002885 |
| SUPERFAMILY | SSF57850 | RING/U-box | 714 | 766 | 3.79E-20 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 103 | 259 | 1.1E-25 | IPR011990 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 657 | 761 | 2.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 715 | 756 | 2.8E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 711 | 765 | 0.0018 | - |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 176 | 209 | 2.0E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 143 | 177 | 10.248873 | IPR002885 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 715 | 757 | 12.902362 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 788 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 363 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025793676.1 | putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Panicum hallii] | 0 |
| Q8LC69 | RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A835BHW9 | DYW_deaminase domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_035269 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for nbis-gene-36195.