Basic Information
Locus ID:
nbis-gene-36177
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
MADS
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00053.1 | 374873 | 381655 | + | nbis-gene-36177 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.80 | 48,659.65 Da | 64.20 | 78.00 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 337 | 393 | 3.36985E-37 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 344 | 391 | 1.7E-26 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 337 | 398 | 1.06E-27 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 347 | 413 | 8.2E-25 | IPR036879 |
| SMART | SM00432 | madsneu2 | 335 | 394 | 5.3E-40 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 335 | 395 | 31.566751 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 337 | 391 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 372 | 393 | 2.3E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 357 | 372 | 2.3E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 337 | 357 | 2.3E-30 | IPR002100 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11880.2 | - | 0 |
| RefSeq | XP_042054828.1 | MADS-box protein SOC1-like isoform X3 [Salvia splendens] | 0 |
| A2Z9Q7 | MADS-box transcription factor 56 OS=Oryza sativa subsp. indica OX=39946 GN=MADS56 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811MBZ6 | MADS-box domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS2322 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology