Basic Information
Locus ID:
nbis-gene-36123
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00053.1 | 131591 | 135885 | - | nbis-gene-36123 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 21,895.38 Da | 27.05 | 88.91 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 175 | 200 | 1.9E-5 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 108 | 1.3E-14 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 209 | 3.15E-27 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 6 | 83 | 3.5E-15 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 86 | 172 | 9.3E-7 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 173 | 209 | 1.5E-6 | IPR036770 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 6.0E-7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 174 | 206 | 0.0028 | IPR002110 |
| SMART | SM00248 | ANK_2a | 87 | 117 | 0.59 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 174 | 200 | 10.842607 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 87 | 108 | 9.118069 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 174 | 200 | 10.87314 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 14.344751 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 15.46726 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 87 | 108 | 9.13699 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_047093643.1 | probable E3 ubiquitin-protein ligase XBOS33 [Lolium rigidum] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A317YJC3 | Putative E3 ubiquitin-protein ligase XBOS33 OS=Zea mays OX=4577 GN=XBOS33 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology