Basic Information
Locus ID:
nbis-gene-36064
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00052.1 | 1684032 | 1694897 | + | nbis-gene-36064 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 17,148.18 Da | 45.63 | 79.66 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 109 | 139 | 3.9E-6 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 46 | 141 | 8.46E-15 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 20 | 89 | 9.8E-8 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 107 | 147 | 6.4E-9 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 142 | 12.264959 | IPR028889 |
| Coils | Coil | Coil | 57 | 77 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_019188510.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Ipomoea nil] | 0 |
| Q2R4I5 | Inactive ubiquitin-specific protease 5 OS=Oryza sativa subsp. japonica OX=39947 GN=UBP5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9UP27 | Ubiquitin carboxyl-terminal hydrolase OS=Eragrostis curvula OX=38414 GN=EJB05_27992 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_02G000740, COCNU_02G000750 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-36063, nbis-gene-36064, nbis-gene-38598 ... |