Basic Information
Locus ID:
nbis-gene-35733
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00051.1 | 1220092 | 1233495 | + | nbis-gene-35733 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 94,345.10 Da | 45.21 | 81.44 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 156 | 236 | 2.66736E-22 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 452 | 707 | 2.2E-70 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 107 | 345 | 9.2E-7 | IPR001394 |
| Pfam | PF00917 | MATH domain | 161 | 234 | 7.9E-8 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 721 | 772 | 1.1E-7 | IPR029346 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 156 | 267 | 8.72E-15 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 226 | 370 | 9.81E-25 | IPR038765 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 154 | 270 | 1.2E-22 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 633 | 754 | 2.3E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 512 | 631 | 4.4E-40 | - |
| SMART | SM00061 | math_3 | 156 | 261 | 1.4E-8 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 154 | 313 | 19.035759 | IPR002083 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_039797660.1 | ubiquitin C-terminal hydrolase 12-like isoform X2 [Panicum virgatum] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W0S6 | ubiquitinyl hydrolase 1 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_15031 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology