Basic Information
Locus ID:
nbis-gene-35486
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00050.1 | 1806005 | 1811680 | - | nbis-gene-35486 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 71,162.50 Da | 53.72 | 84.43 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 199 | 250 | 6.76316E-7 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 199 | 249 | 2.7E-6 | IPR018957 |
| SUPERFAMILY | SSF53300 | vWA-like | 388 | 516 | 3.3E-9 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 193 | 259 | 1.33E-12 | - |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 350 | 518 | 1.7E-7 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 186 | 291 | 1.1E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 199 | 249 | 3.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 199 | 250 | 11.176261 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54780.3 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_034580356.1 | E3 ubiquitin-protein ligase WAV3-like [Setaria viridis] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5UYC1 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0021161 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg20529, jg21748, jg24727 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6202 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030082 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g163170 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg57043 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24638 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000005387, gene:ENSEOMG00000039285 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7AG0017010 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30066370 |
| Apiaceae | Apium graveolens | 1 | Ag1G01712 |
| Arecaceae | Cocos nucifera | 1 | scaffold016239G000160 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710661 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_05.758.V1.1, AsparagusV1_05.759.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | FtriNA07398 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000890m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB02g064380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1438 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1482 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g09200 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g11090, gene.Thate07g08550 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3896 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1307 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006130, Pov_00011640 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27610 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1475, BH03.1628, CH03.1781 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0531340, gene-QOZ80_6BG0485140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0471860.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_004429, gene-QYE76_044938, gene-QYE76_044939 |
| Poaceae | Oryza coarctata | 2 | Oco17G002090, Oco18G002040 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g12720.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G142600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702692 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G012480, Chr11G009730, Chr14G011990 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G303000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG029070, gene_TRIDC5BG030590 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G178300.1, TraesCS5B02G176000.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb309310_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-35486, nbis-gene-47932, nbis-gene-54894 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30139, Zma_g32342 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.213, evm.TU.LG04.539 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g22430 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1410 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20082, nbisL1-mrna-20209 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13548 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13358, nbisL1-mrna-17968 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.241 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012104 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9061 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12096 |
| Salicaceae | Populus euphratica | 2 | populus_peu10500, populus_peu26569 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616117 |
| Solanaceae | Solanum chilense | 1 | SOLCI004079400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015687 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.7138_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1221 |
| Zosteraceae | Zostera marina | 1 | Zosma04g22980.v3.1 |