Basic Information
Locus ID:
nbis-gene-35452
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00050.1 | 1608741 | 1612444 | + | nbis-gene-35452 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 28,364.92 Da | 41.40 | 73.09 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 22 | 253 | 2.5E-82 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 134 | 243 | 2.55E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 137 | 256 | 6.0E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 142 | 244 | 26.401651 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 102 | - | - |
| Coils | Coil | Coil | 83 | 104 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_015644240.1 | auxin-responsive protein IAA21 [Oryza sativa Japonica Group] | 0 |
| Q5Z749 | Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TCF0 | Auxin-responsive protein OS=Eragrostis curvula OX=38414 GN=EJB05_42440 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology