Basic Information
Locus ID:
nbis-gene-34870
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00049.1 | 831003 | 837816 | + | nbis-gene-34870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 77,157.88 Da | 52.51 | 70.89 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 138 | 190 | 1.09823E-25 | - |
| Pfam | PF12315 | Protein DA1 | 371 | 471 | 1.4E-37 | IPR022087 |
| Pfam | PF00412 | LIM domain | 138 | 194 | 4.2E-8 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 288 | 363 | 1.6E-27 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 133 | 163 | 3.75E-6 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 165 | 223 | 3.12E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 134 | 197 | 4.9E-13 | - |
| SMART | SM00726 | uim | 78 | 97 | 110.0 | IPR003903 |
| SMART | SM00132 | lim_4 | 137 | 189 | 1.7E-9 | IPR001781 |
| SMART | SM00726 | uim | 47 | 66 | 0.57 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 136 | 196 | 12.0682 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 50 | 66 | 8.670219 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 138 | 172 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 119 | - | - |
| Coils | Coil | Coil | 685 | 687 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_021305840.1 | protein DA1 [Sorghum bicolor] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | C5Z5H9 | LIM zinc-binding domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3010G064600 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology