Basic Information
Locus ID:
nbis-gene-34785
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00049.1 | 488980 | 506725 | - | nbis-gene-34785 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 51,715.62 Da | 48.93 | 75.68 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 322 | 363 | 1.95338E-24 | - |
| Pfam | PF04564 | U-box domain | 319 | 389 | 4.2E-18 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 191 | 283 | 9.3E-9 | IPR000719 |
| SUPERFAMILY | SSF48452 | TPR-like | 2 | 74 | 6.07E-10 | IPR011990 |
| SUPERFAMILY | SSF57850 | RING/U-box | 315 | 391 | 1.34E-25 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 88 | 133 | 6.51E-9 | IPR011990 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 186 | 320 | 2.82E-17 | IPR011009 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 78 | 7.7E-12 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 169 | 311 | 1.1E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 317 | 393 | 3.4E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 79 | 168 | 3.4E-8 | IPR011990 |
| SMART | SM00504 | Ubox_2 | 321 | 384 | 5.9E-30 | IPR003613 |
| SMART | SM00028 | tpr_5 | 89 | 122 | 2.1E-5 | IPR019734 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 317 | 391 | 41.850773 | IPR003613 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 89 | 122 | 10.6204 | IPR019734 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 458 | - | - |
| Coils | Coil | Coil | 150 | 170 | - | - |
| Coils | Coil | Coil | 61 | 84 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_039842554.1 | U-box domain-containing protein 70-like isoform X2 [Panicum virgatum] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TM73 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_46066 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.358, BH06.474, CH06.471 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0510180, gene-QOZ80_6AG0512070 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0654940.1, HORVU.MOREX.r3.7HG0655040.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028463, gene-QYE76_028467 |
| Poaceae | Oryza coarctata | 2 | Oco11G002860, Oco12G002920 |
| Poaceae | Oryza sativa | 4 | LOC_Os06g06450.1, LOC_Os06g06470.1, LOC_Os06g06490.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G053600 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0100581, Pt_Chr0401511, Pt_Chr0401540, Pt_Chr0402087 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G022250 |
| Poaceae | Thinopyrum elongatum | 5 | Tel6E01G117100, Tel6E01G538000, Tel7E01G244100 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC7AG014340, gene_TRIDC7AG014380 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G122200.2, TraesCS7A02G122600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb257390_P002, Zm00001eb375820_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34785 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31406 |