Basic Information
Locus ID:
nbis-gene-34749
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00049.1 | 350453 | 350995 | - | nbis-gene-34749 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 18,368.21 Da | 40.36 | 92.28 | 0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 125 | 168 | 9.0E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 173 | 1.35E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 173 | 1.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 126 | 167 | 7.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 126 | 168 | 12.415513 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025813272.1 | RING-H2 finger protein ATL66-like [Panicum hallii] | 0 |
| Q9FKX5 | NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7E2U2 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G333600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.296, BH06.405, CH06.402 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0509460, gene-QOZ80_6BG0461560 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013958 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g06150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G047100 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G022660 |
| Poaceae | Zea mays | 1 | Zm00001eb376620_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34749 |