Basic Information
Locus ID:
nbis-gene-34578
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00048.1 | 1095726 | 1102938 | - | nbis-gene-34578 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 73,849.94 Da | 50.03 | 91.10 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 377 | 673 | 6.11637E-89 | IPR000092 |
| CDD | cd17039 | Ubl_ubiquitin_like | 3 | 70 | 1.25069E-11 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 96 | 148 | 9.02074E-5 | - |
| Pfam | PF00240 | Ubiquitin family | 96 | 149 | 1.5E-4 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 9 | 72 | 3.8E-10 | IPR000626 |
| Pfam | PF00348 | Polyprenyl synthetase | 381 | 626 | 2.7E-73 | IPR000092 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 96 | 150 | 4.6E-7 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 72 | 1.17E-14 | IPR029071 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 350 | 673 | 5.44E-86 | IPR008949 |
| Gene3D | G3DSA:3.10.20.90 | - | 87 | 154 | 1.3E-5 | - |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 351 | 674 | 4.5E-96 | IPR008949 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 73 | 1.1E-14 | - |
| SMART | SM00213 | ubq_7 | 1 | 72 | 2.3E-4 | IPR000626 |
| SMART | SM00213 | ubq_7 | 84 | 158 | 6.2 | IPR000626 |
| TIGRFAM | TIGR02749 | prenyl_cyano: solanesyl diphosphate synthase | 352 | 674 | 1.5E-154 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 86 | 148 | 9.41707 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 71 | 14.447187 | IPR000626 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 437 | 451 | - | IPR033749 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 559 | 571 | - | IPR033749 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 234 | - | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 384 | 672 | 0.0 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Reaction:
R07267 (all-trans-Octaprenyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + all-trans-Nonaprenyl diphosphate)
R09250 (Geranyl diphosphate + 7 Isopentenyl diphosphate <=> all-trans-Nonaprenyl diphosphate + 7 Diphosphate)
R09251 (Geranylgeranyl diphosphate + 5 Isopentenyl diphosphate <=> all-trans-Nonaprenyl diphosphate + 5 Diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78510.2 | solanesyl diphosphate synthase 1. Encodes a protein with solanesyl diphosphate synthase activity. | 0 |
| RefSeq | XP_004962526.1 | probable solanesyl-diphosphate synthase 3, chloroplastic [Setaria italica] | 0 |
| Q0INZ4 | Probable solanesyl-diphosphate synthase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SPS3 PE=3 SV=2 | 0 | |
| TrEMBL | A0A1E5VMT1 | Putative solanesyl-diphosphate synthase 3, chloroplastic OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0012617 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19175, jg21212, jg24302 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12618 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007484 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g164490 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19056, Sbi_jg37485 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5329 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009985 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl22187, Sgl27453 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009800, gene:ENSEOMG00000028567 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0016840, CQ.Regalona.r1.4BG0017210 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30120080, pistato.v30163410 |
| Apiaceae | Apium graveolens | 2 | Ag2G02267, AgUnG00945 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G006900, COCNU_14G004540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712684 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.807.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G08551 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G17050.1, AT1G78510.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007715m.g.v1.0, Thhalv10018616m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g15170.v2.2, Sp5g33600.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g027250.2N, BniB03g058080.2N, BniB06g042450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0831 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0952, Cgl01G0954 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g08670 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0279s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00450 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1357 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009516 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G36737 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.1241, BH05.1423, BH05.3245, CH05.1592, CH05.3321 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0361770, gene-QOZ80_5AG0387150 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0092200.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015231 |
| Poaceae | Oryza coarctata | 4 | Oco09G017810, Oco10G017690, Oco23G004700, Oco24G004200 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g50550.1, LOC_Os12g17320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G250100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0506011, Pt_Chr0506035 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G020510, Chr06G021920, Chr0G005360, Chr19G014310 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G698000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG061930, gene_TRIDC1BG071020 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G420900.2, TraesCS1B02G452100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb004050_P006, Zm00001eb297120_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-12401, nbis-gene-24745, nbis-gene-34578 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g24969, Zma_g25695, Zma_g28884 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.1129 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g03290 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.150 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11121 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1559 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10639 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.95 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013725 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9117 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15340 |
| Salicaceae | Populus euphratica | 2 | populus_peu00699, populus_peu17756 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617245 |
| Solanaceae | Solanum chilense | 1 | SOLCI000986500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026209 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7765 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0002 |
| Zosteraceae | Zostera marina | 2 | Zosma01g06520.v3.1, Zosma03g01470.v3.1 |