Basic Information
Locus ID:
nbis-gene-34380
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00047.1 | 1805693 | 1809161 | - | nbis-gene-34380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 42,225.51 Da | 38.69 | 77.20 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 320 | 368 | 6.2E-10 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 78 | 270 | 4.88E-17 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 273 | 370 | 3.81E-17 | IPR036028 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 316 | 370 | 4.1E-16 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 76 | 273 | 2.9E-7 | IPR027267 |
| SMART | SM00326 | SH3_2 | 316 | 371 | 1.6E-13 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 313 | 372 | 20.416891 | IPR001452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 27 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 180 | 200 | - | - |
| Coils | Coil | Coil | 217 | 244 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_015612895.1 | SH3 domain-containing protein 2 [Oryza sativa Japonica Group] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0EZV0 | SH3 domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology