Basic Information
Locus ID:
nbis-gene-34205
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00047.1 | 921317 | 921811 | + | nbis-gene-34205 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 18,399.44 Da | 50.87 | 97.99 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 98 | 142 | 5.43538E-17 | - |
| Pfam | PF13639 | Ring finger domain | 98 | 142 | 1.2E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 98 | 154 | 6.36E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 76 | 148 | 2.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 99 | 141 | 7.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 99 | 142 | 12.149959 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17905.1 | RING/U-box superfamily protein. Putative RING-H2 finger protein ATL4H. | 0 |
| RefSeq | XP_034607218.1 | E3 ubiquitin-protein ligase EL5-like [Setaria viridis] | 0 |
| P0C041 | Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2 | 0 | |
| TrEMBL | A0A5J9VC60 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_25049 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH07.1022, BH07.1136, BH07.1141, CH07.914, CH07.920 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0107690, gene-QOZ80_2AG0107720 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0575080.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022027, gene-QYE76_048206 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G103600 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G013640, Chr0G033280, Chr15G023360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G344800 |
| Poaceae | Triticum aestivum | 1 | TraesCS6A02G172100.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb238470_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34205, nbis-gene-53142 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12513 |