Basic Information
Locus ID:
nbis-gene-34204
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00047.1 | 915984 | 917328 | + | nbis-gene-34204 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 26,659.93 Da | 58.80 | 68.31 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 196 | 225 | 3.4E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 195 | 233 | 1.77E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 238 | 9.0E-12 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 113 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034607218.1 | E3 ubiquitin-protein ligase EL5-like [Setaria viridis] | 0 |
| P93823 | RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6W6C4 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G018200v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for nbis-gene-34204.